27.04.2026: No bar on filing a second or supplementary refund application within the limitation period, even if it pertains to a period covered in an earlier claim: Bombay High Court

Bombay High CourtFacts of the Case:

In this case, the petitioner challenged the rejection of its refund claim for the tax period August 2022, which was denied by the Assistant Commissioner on the ground that the petitioner had already filed a prior refund application for the consolidated period July 2022 to September 2022 and had obtained refund sanction. The department held that a second refund application for an intervening period August 2022 was not maintainable, even though the claim pertained to an invoice inadvertently omitted in the earlier application. It was undisputed that the second refund application was filed within the statutory time limit of two years prescribed under Section 54(1) of the CGST Act.

The petitioner contended that there is no statutory prohibition against filing a subsequent refund application, particularly when the omission was inadvertent and the claim was otherwise valid.

Issue:

Whether a second refund application under Section 54(1) of the CGST Act is maintainable for an omitted claim or invoice, when an earlier refund application covering a broader period had already been filed and sanctioned, but the subsequent claim is filed within the prescribed limitation period.

Held That:

The High Court held in favour of the petitioner, observing that Section 54(1) of the CGST Act does not impose any restriction on filing multiple refund applications, especially in cases involving inadvertent errors or omissions. The Court emphasized that the only statutory condition is adherence to the limitation period, which was satisfied in the present case. It further held that rejection of the refund claim on purely technical grounds such as prior filing for a broader period was unsustainable and contrary to the object of the statute.

The Court clarified that principles akin to res judicata do not apply to GST refund claims, as such claims are invoice-specific and period-specific. Additionally, the authority erred in disregarding binding judicial precedents which permit supplementary refund claims for omitted amounts. Consequently, the impugned order was quashed and the matter was remanded for fresh consideration on merits.

This ruling reinforces that GST refund provisions must be interpreted liberally to uphold substantive rights. There is no bar on filing a second or supplementary refund application within the limitation period, even if it pertains to a period covered in an earlier claim. Procedural lapses or inadvertent omissions cannot defeat a legitimate refund entitlement. The decision also highlights that refund claims are independent in nature, and technical objections such as overlapping periods cannot be used to deny relief.

Case Name: Valmet Flow Control Pvt. Ltd. Thr. Its Authorised Director Shri Vishwas Sham Lele Versus Union of India, Through its Secretary, Department of Finance, New Delhi, Central Board of Indirect Taxes and Customs, New Delhi, Assistant Commissioner of GST & Central Excise, Division – III, Thane. dated 22.04.2026

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